MmuEX6099740 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26279937-26281107:-
Coord C1 exon
chr2:26280996-26281107
Coord A exon
chr2:26280714-26280819
Coord C2 exon
chr2:26279937-26280077
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCACTTCTTCCACAGTTT
3' ss Score
9.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATCAAAAGGCCTGTTGGATGCTGCACACTTCTGCTACCTGATGGCCCAGGTTGGATTTGGGGTTTATACAAAGAAAACTACAAAACTTGTCTTGATAGGCTCAAATCACAG
Seq A exon
TTTGCCCTTTTTAAAGTTTGCCACCAATGAAGCCATTCAAAGGACGGAGGCTTATGAGTATGCTCAGTCCCTTGGGGCACATACCTGTTCCTTACCTAACTTCCAG
Seq C2 exon
GTGTTTAAATTCATCTACTTGTGCCGCCTGGCTGAAATGGGACTTGCCACACAGGCCTTCCACTACTGCGAAGTAATAGCCAAGAGTGTCCTGACACAGCCTGGTGCATACTCTCCAGTACTGATTAGCCAGTTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'19-24,'19-22,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(14.0=100)
A:
PF129312=Sec16_C=FE(13.3=100)
C2:
PF129312=Sec16_C=FE(55.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAGGCCTGTTGGATGCT
R:
ACTGGCTAATCAGTACTGGAGAGT
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: