HsaEX6064034 @ hg19
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:29006]
Coordinates
chr9:139351896-139354007:-
Coord C1 exon
chr9:139353896-139354007
Coord A exon
chr9:139353586-139353691
Coord C2 exon
chr9:139351896-139352036
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAATTCACTTCCTCTACAGTTT
3' ss Score
7.07
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTCAAGGGGCCTCTTGGATGCGGCCCACTTCTGCTACCTCATGGCCCAGGCGGGATTTGGTGTTTACACGAAGAAAACTACAAAGCTTGTCTTAATCGGATCCAATCACAG
Seq A exon
TTTGCCATTCTTAAAGTTCGCAACCAACGAAGCAATCCAGAGGACGGAAGCCTATGAGTACGCCCAGTCCCTGGGTGCCGAGACCTGCCCCCTGCCTAGTTTCCAG
Seq C2 exon
GTGTTTAAGTTCATCTACTCCTGCCGCCTGGCGGAAATGGGGCTGGCCACGCAAGCCTTCCACTACTGTGAGGCCATCGCGAAGAGCATCCTGACGCAGCCGCACCTGTATTCCCCGGTGTTGATCAGCCAGCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(14.2=100)
A:
PF129312=Sec16_C=FE(13.4=100)
C2:
PF129312=Sec16_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGGGGCCTCTTGGATG
R:
ACAAGCTGGCTGATCAACACC
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)