GgaEX1051404 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8552552-8553317:+
Coord C1 exon
chr17:8552552-8552663
Coord A exon
chr17:8552841-8552946
Coord C2 exon
chr17:8553177-8553317
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCATTCCTCAATAGCTT
3' ss Score
8.19
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CTTCTAAAGGCCTGCTGGATGCTGCTCACTTCTGTTACCTTATGGCTCAAGTTGGTTTTGGAGTTTACACGAGGAAGACGACAAAGCTTGTCCTGATTGGATCAAATCACAG
Seq A exon
CTTGCCATTTTTAAAGTTTGCCACCAATGAAGCTATTCAAAGAACGGAAGCCTACGAATATGCACAGTCACTAGGAACTCAGCCTGGCTGCTTGCCCAATTTCCAG
Seq C2 exon
GTTTTCAAATTCATCTATGCTTGCCGACTAGCTGAAATGGGACTTGCTGCTCAGGCTTTCCATTACTGTGAAGTGATTTCCAGAACTGTCCTTAAAGATCCACAGTACTATTCACCTGTACTAATTGGCCAGCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.7=100)
A:
PF129312=Sec16_C=FE(13.0=100)
C2:
PF129312=Sec16_C=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAAGGCCTGCTGGATGC
R:
AGCTGGCCAATTAGTACAGGTG
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]