BtaEX6047212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103948584-103949714:-
Coord C1 exon
chr11:103949603-103949714
Coord A exon
chr11:103949355-103949460
Coord C2 exon
chr11:103948584-103948724
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACGACGCCTGTGCTCCACAGTTT
3' ss Score
6.15
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCTCCAAAGGGCTCATTGATGCTGCGCACTTCTGCTACCTCATGGCCCAGGTCGGATTTGGGGTGTACACCAAGAAGACCGCAAAGCTTGTCTTAATTGGGTCAAACCACAG
Seq A exon
TTTGCCGTTTTTGAAGTTTGCGACCAACGAGGCGATCCAGAGGACAGAGGCCTATGAGTACGCGCAGTCCCTGGGGGCGCAGGCCTGCTCCCCTCCCAGCTTCCAG
Seq C2 exon
GTGTTCAGGTTCATCTACTGCTGCCGCCTGGCTGAGATGGGGCTGGCCGCGCAGGCCTTCCACTACTGCGAGGCGATCGCCAGGAGCGTCCTGGCGCAGCCGCACAGACACTCGCCCGTGCTGCTTCGCCAGCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(14.1=100)
A:
PF129312=Sec16_C=FE(13.3=100)
C2:
PF129312=Sec16_C=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTGATGCTGCGCACTTC
R:
CTGCACCAGCTGGCGAAG
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]