HsaEX6064034 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136457444-136459555:-
Coord C1 exon
chr9:136459444-136459555
Coord A exon
chr9:136459134-136459239
Coord C2 exon
chr9:136457444-136457584
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAATTCACTTCCTCTACAGTTT
3' ss Score
7.07
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTCAAGGGGCCTCTTGGATGCGGCCCACTTCTGCTACCTCATGGCCCAGGCGGGATTTGGTGTTTACACGAAGAAAACTACAAAGCTTGTCTTAATCGGATCCAATCACAG
Seq A exon
TTTGCCATTCTTAAAGTTCGCAACCAACGAAGCAATCCAGAGGACGGAAGCCTATGAGTACGCCCAGTCCCTGGGTGCCGAGACCTGCCCCCTGCCTAGTTTCCAG
Seq C2 exon
GTGTTTAAGTTCATCTACTCCTGCCGCCTGGCGGAAATGGGGCTGGCCACGCAAGCCTTCCACTACTGTGAGGCCATCGCGAAGAGCATCCTGACGCAGCCGCACCTGTATTCCCCGGTGTTGATCAGCCAGCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396-'37-41,'37-39,38-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(14.1=100)
A:
PF129312=Sec16_C=FE(13.3=100)
C2:
PF129312=Sec16_C=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGGGGCCTCTTGGATG
R:
ACAAGCTGGCTGATCAACACC
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains