MmuEX6028534 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157552933-157565529:+
Coord C1 exon
chr1:157552933-157553044
Coord A exon
chr1:157554747-157554852
Coord C2 exon
chr1:157565421-157565529
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTCCCTGCTTTTAGTCA
3' ss Score
7.26
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGGAAAAGGGCTTGTGGAGGCATCTCACTTCTGCTATCTCATGGCTCATGTGCCCTTTGGTCACTATACGGTGAAGACAGATCATCTGGCCTTGGTGGGCAGTAGCCACAG
Seq A exon
TCAAGAGTTTATGAAATTTGCAACAATTGAGGCTATCCAGCGGACGGAAATCTTCGAGTACTGCCAGATGCTGGGCCGCCCCAAATCCTTCATCCCTTCTTTCCAG
Seq C2 exon
GAGTCTCCCAGAGCATCTTCTCCTCACCATGCGAGCCCAGGCCTCTCACCAACACCTCCTCTCACATCCCCATCCCTGCCAGGTGCCAGCACCTTCTCGAGAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589_MULTIEX1-13/22=12-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.0=100)
A:
PF129312=Sec16_C=FE(14.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAAGGGCTTGTGGAGG
R:
TGCCTCTCGAGAAGGTGCTG
Band lengths:
218-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types