MmuEX6028534 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159483064-159487036:+
Coord C1 exon
chr1:159483064-159483175
Coord A exon
chr1:159484878-159484983
Coord C2 exon
chr1:159486896-159487036
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTCCCTGCTTTTAGTCA
3' ss Score
7.26
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGGAAAAGGGCTTGTGGAGGCATCTCACTTCTGCTATCTCATGGCTCATGTGCCCTTTGGTCACTATACGGTGAAGACAGATCATCTGGCCTTGGTGGGCAGTAGCCACAG
Seq A exon
TCAAGAGTTTATGAAATTTGCAACAATTGAGGCTATCCAGCGGACGGAAATCTTCGAGTACTGCCAGATGCTGGGCCGCCCCAAATCCTTCATCCCTTCTTTCCAG
Seq C2 exon
GTGTATAAGCTCCTCTATGCCTCCCGTCTGGCAGATTATGGCCTGGCATCCCAGGCCTTGCATTACTGTGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGAAGGGAGCAGCCACCCTGTGCTATTAGCGGAGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.0=100)
A:
PF129312=Sec16_C=FE(14.2=100)
C2:
PF129312=Sec16_C=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAAGGGCTTGTGGAGG
R:
GAGCTCCGCTAATAGCACAGG
Band lengths:
247-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: