DreEX6021767 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23801843-23804430:-
Coord C1 exon
chr6:23804293-23804430
Coord A exon
chr6:23804055-23804168
Coord C2 exon
chr6:23801843-23801921
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTGCTACAACAGTTG
3' ss Score
4.96
5' ss Seq
CTGGTAATA
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTGTATAAATTCCTGTATGCATGCCGGCTGCTGGACTGTGGGCTCGTTTCTCAGGCCTTCCACTACTGTGAAGTGGTGGGGAAAGCTCTGCTTAGAATAGACCAACCCCATGTGGTGCTATTGGGAGAGCTTATAAAA
Seq A exon
TTGGTGGATAGACTGAAGTTCTCCGAAGCACAGCTCAATGACACGTGTGACGGTCAGCTTTTCCTGGACCCCGATTGGTTGGTGCAGATCCGCTGCAAACACCAGACCCTGCTG
Seq C2 exon
GGAGAGAACTACTGCAGTGAGACGTACCAGTCCCCAGCTGAGGAGACTTCATGGACTCAGGACAGCAACAAGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.407
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(18.0=100)
A:
PF129312=Sec16_C=PD(7.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCCTGTATGCATGCCGGC
R:
CTGAATACTTGTTGCTGTCCTGAGT
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]