MmuEX6028532 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159486896-159489652:+
Coord C1 exon
chr1:159486896-159487036
Coord A exon
chr1:159488166-159488279
Coord C2 exon
chr1:159489580-159489652
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCCTGGAAACTCGGCTCAGCTC
3' ss Score
-0.63
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTATAAGCTCCTCTATGCCTCCCGTCTGGCAGATTATGGCCTGGCATCCCAGGCCTTGCATTACTGTGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGAAGGGAGCAGCCACCCTGTGCTATTAGCGGAGCTCATCAAG
Seq A exon
CTCGCAGAGAAACTGAAGCTGTCAGATCCTCTGGTTTTAGAAAGACGCCGTGGGGACAGGGACCTGGAACCAGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGACCTGGAG
Seq C2 exon
CAAAATAGAACAGGAGCCCCGAGAGATCCTGATTCGACTCCTTCAGATATTTATGGAGCTGGAGGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(18.7=100)
A:
PF129312=Sec16_C=PD(5.7=36.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCTCCTCTATGCCTCCCG
R:
CTGTTGTTCCTCCAGCTCCAT
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: