BtaEX6069966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60758911-60761826:-
Coord C1 exon
chr16:60761686-60761826
Coord A exon
chr16:60760186-60760305
Coord C2 exon
chr16:60758911-60758983
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATCTGGAAACCGGGCACAGCTG
3' ss Score
-1.16
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTATAAGCTCCTCTATGCGTCCCGTCTGGCAGATTATGGCCTCACGTCCCAGGCCTTGCATTACTGCGAAGCCGTTGGCACAGCCCTCCTGAGCCACGGAGAGAGCAGTCACCCTGTGTTATTAGTGGAACTCATCAAG
Seq A exon
CTGGCAGAGAGACTGAAGCTGTCAGATCCTCTGGTTTTAGAACGCCGCCGCCACCGAGGAGACAGGGACCTGGAGCCGGACTGGCTGGTGCACCTTCGGGGGCATCACAGGGAGCTGCAG
Seq C2 exon
CAAAAGGAAGCAGGAGACATTGGCCGTCCTCAGTCTGCTCAAGTGGTTATTTCGGAAGCCAGAAAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'27-27,'27-24,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.275 C2=0.880
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(18.8=100)
A:
PF129312=Sec16_C=PD(5.3=32.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCTCCTCTATGCGTCCCG
R:
CTGGAGTTTTTCTGGCTTCCGA
Band lengths:
210-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]