GgaEX0005937 @ galGal3
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
NA
Coordinates
chr8:6933172-6935134:+
Coord C1 exon
chr8:6933172-6933312
Coord A exon
chr8:6934783-6934896
Coord C2 exon
chr8:6935065-6935134
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCGTGTCCCTGCACCACAGCTG
3' ss Score
7.73
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTACAAGCTCCTCTATGCCTCCCGCCTGGCTGACCATGGGCTGCCAGCCCAAGCCCTGCTCTACTGTGAGCAGATTGCTACCGTGCTCCTCCAGCAGGACCCAACCAGCCACCCTGTCCTGGCCCAGCAGCTGACCAAG
Seq A exon
CTGGCCGAGCGACTGAAGCTCTGTGACCCACTGCTGCTGGAGATGCCTGAGCAGGACCCGGTGCTGGAGCCCCAGTGGCTGCTGCAGCTCCGCACCTACTGCCAGCGCTGCCAG
Seq C2 exon
GTGCAGGATGACCTCGCTCCAGAGGTGGCACTGACCCAGCCAGAGCCCTGGGATACTACAGCCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.792
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(19.2=100)
A:
PF129312=Sec16_C=PD(3.3=21.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAAGCTCCTCTATGCCT
R:
CTGGGGTGGCTGTAGTATCCC
Band lengths:
211-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]