HsaEX6035109 @ hg38
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177939702-177942040:-
Coord C1 exon
chr1:177941900-177942040
Coord A exon
chr1:177940610-177940714
Coord C2 exon
chr1:177939702-177939777
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATCTGGAAACCTGGCACAGCTA
3' ss Score
-0.93
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTATGGCCTCGTGTCCCAGGCTTTGCATTACTGCGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGGAGAGAGCAGTCACCCTGTGCTATTAGTGGAACTCATCAAG
Seq A exon
CTAGCAGAGAAACTGAAGCTGTCAGATCCTCTGGTTTTAGAAAGACGCAGTGGAGACAGGGACCTGGAGCCAGATTGGCTAGCGCAACTTCGGAGGCAGCTGGAG
Seq C2 exon
CAAAAGGTAGCAGGAGACATTGGGGATCCTCATCCTACTCGCTCAGATATTTCGGGAGCCGGAGGAACAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'21-25,'21-24,22-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(16.8=100)
A:
PF129312=Sec16_C=FE(12.5=100)
C2:
PF129312=Sec16_C=PD(2.2=23.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCTTTATGCTTCCCGTC
R:
CTGTTGTTGTTCCTCCGGCTC
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains