HsaEX6035109 @ hg19
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177908837-177911175:-
Coord C1 exon
chr1:177911035-177911175
Coord A exon
chr1:177909745-177909849
Coord C2 exon
chr1:177908837-177908912
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATCTGGAAACCTGGCACAGCTA
3' ss Score
-0.93
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTATGGCCTCGTGTCCCAGGCTTTGCATTACTGCGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGGAGAGAGCAGTCACCCTGTGCTATTAGTGGAACTCATCAAG
Seq A exon
CTAGCAGAGAAACTGAAGCTGTCAGATCCTCTGGTTTTAGAAAGACGCAGTGGAGACAGGGACCTGGAGCCAGATTGGCTAGCGCAACTTCGGAGGCAGCTGGAG
Seq C2 exon
CAAAAGGTAGCAGGAGACATTGGGGATCCTCATCCTACTCGCTCAGATATTTCGGGAGCCGGAGGAACAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(16.8=100)
A:
PF129312=Sec16_C=FE(12.5=100)
C2:
PF129312=Sec16_C=PD(2.2=23.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCTTTATGCTTCCCGTC
R:
CTGTTGTTGTTCCTCCGGCTC
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)