RnoEX6044919 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75205245-75207927:+
Coord C1 exon
chr13:75205245-75205385
Coord A exon
chr13:75206549-75206662
Coord C2 exon
chr13:75207855-75207927
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGCCTGGAAACTCGGCTCAGCTT
3' ss Score
-1.28
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTACGGCCTGGCATCCCAAGCCTTGCATTACTGTGAAGCCATTGGTGCAGCTGTCCTGAGCGAGGGAGGGAGCAGTCACCCCGTGCTATTAGCGGAGCTCATCAAG
Seq A exon
CTTGCAGAGAAACTGAAGCTGTCGGATCCTCTGGTTTTAGAAAGCCGCCGTGGGGACAGGGTCCTGGAACCGGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGAACTGGAG
Seq C2 exon
CAAACTAGAACTGGAGACCTCAGAGATCCTGATCTGACTCCTTCAGATATTTATGGAGCCAGAGGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'22-29,'22-27,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.960
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(18.7=100)
A:
PF129312=Sec16_C=PD(5.7=36.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCTCCTTTATGCTTCCCGT
R:
CTGTTGTTCCTCTGGCTCCAT
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]