MmuEX6099742 @ mm10
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26423454-26424557:-
Coord C1 exon
chr2:26424417-26424557
Coord A exon
chr2:26423883-26423996
Coord C2 exon
chr2:26423454-26423637
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTGGGGTCTAGATG
3' ss Score
6.55
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGTTTAAATTCATCTACTTGTGCCGCCTGGCTGAAATGGGACTTGCCACACAGGCCTTCCACTACTGCGAAGTAATAGCCAAGAGTGTCCTGACACAGCCTGGTGCATACTCTCCAGTACTGATTAGCCAGTTGACTCAG
Seq A exon
ATGGCTTCCCAGTTACGCCTCTTCGATCCTCAACTGAAGGAGAAGCCAGAAGAGGAGTCCTTTGTGGAGCCTGCCTGGTTGGTGCAGCTGCAGCACGTGGAGAGGCAGATCCAG
Seq C2 exon
GAGGGCACTGTGCTGTGGAGCCAGGATGGAACTGAACCCCAGCAGTGTCGCATTACATCGGGCTCTGAGGTGGAGCAGTCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCACAGGCCGACAACCCTCTACTGATGCCAAGCACTGAGCCTTTGATGCATGGCGTGCAACTGCTGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'33-33,'33-32,34-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.868
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(17.4=100)
A:
PF129312=Sec16_C=PD(12.1=84.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGACTTGCCACACAGG
R:
TGCTTGGCATCAGTAGAGGGT
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types