DreEX6043088 @ danRer10
Exon Skipping
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52056159-52070302:-
Coord C1 exon
chr16:52070162-52070302
Coord A exon
chr16:52069971-52070084
Coord C2 exon
chr16:52056159-52056333
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTTTGATATACAGATG
3' ss Score
7.52
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTTCAAGTTCATCTACGCATGTCGTCTGGCGGAGTCTGGTCTCTGCGCTCAAGCTTTTCATTACTGTGAGGTCATTTCCCGCACACTGTTGAGTCTGCCGGAGTATTACTCTCCTGTGTTCATCAGTCAGCTCATACAG
Seq A exon
ATGTCTCTGAGGTTAAGGTTTTTTGACCCTCAGCTGAAGGAACGGCCGGAGCAGGAGTTGTTTATAGAGCCTGATTGGTTACTTCATCTCAGACAACTCGATGGACAGATCAAG
Seq C2 exon
GAGGGTGTGATCTCTTTGCGTACGGACCGCAGCACCCCACAGCTTTACCCCTGCAGTACACCCAGTTCAGAAGACCAGTGCAGCCCGCCTGAACCCCCAGCTCTGACCCCAGACCCCCACAACGCTCTCATGACCTCTCTTGTGCCCCCAGCTGCTGTACAACTCATGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCATTTCCCGCACACTG
R:
GGCATGAGTTGTACAGCAGCT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]