RnoEX0078960 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3870167-3871279:-
Coord C1 exon
chr3:3871139-3871279
Coord A exon
chr3:3870594-3870707
Coord C2 exon
chr3:3870167-3870350
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTGGGGTCTAGATG
3' ss Score
6.55
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GTGTTTAAATTCATCTACTTGTGCCGCCTGGCTGAAATGGGACTCGCTACACAGGCCTTCCACTACTGTGAAGTAATAGCCAAGAGTGTCCTGACACAGCCTACTGCATACTCCCCAGTGCTGATTAGCCAGTTGATTCAG
Seq A exon
ATGGCTTCCCAGTTACGCCTCTTCGATCCTCAACTGAAGGAGAAGCCAGAGGAGGAGTCCTTTGTGGAGCCTGCCTGGTTGGTGCAGCTGCAGCACGTGGAGAGGCAGATCCAG
Seq C2 exon
GAGGGCACTGTGCTGTGGAACCAGGATGGAACTGAACCCCAGCAGTGTCACATCACATCGGGCTCTGAGGTGGAGCAGCCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCAAGGGCCGACAACCCTCTCCTGATGCCAAGCACTGAGCCTTTGGTGCACAGCGTGCAGCTGCTGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'26-26,'26-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.919
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(17.4=100)
A:
PF129312=Sec16_C=PD(12.5=86.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGCCTTCCACTACTGT
R:
CTCAGTGCTTGGCATCAGGAG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]