BtaEX6047214 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103947229-103948724:-
Coord C1 exon
chr11:103948584-103948724
Coord A exon
chr11:103947669-103947782
Coord C2 exon
chr11:103947229-103947421
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATATCTCCATGTGTTTCCAGGTC
3' ss Score
9.53
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTTCAGGTTCATCTACTGCTGCCGCCTGGCTGAGATGGGGCTGGCCGCGCAGGCCTTCCACTACTGCGAGGCGATCGCCAGGAGCGTCCTGGCGCAGCCGCACAGACACTCGCCCGTGCTGCTTCGCCAGCTGGTGCAG
Seq A exon
GTCGCCTCCCAGTTGCGCCTCTTTGACCCTCAGCTGAAGGAGAAGCCGGAGGAGGAGGCATCTGCAGAGCCTCCTTGGCTGGTCCAGCTGCAGCTCGTGGAGAGACAGGTCGAG
Seq C2 exon
GAGGGTGCTGTGGCCTGGAGTCAGGACGGAGCCTGCCCCCCACACTGCCCCAGCTCACCAAGCCCTGAGGTGGGGCCCCGTGACGGCCCAGAACCCACCCAGCTGGTGGGCCTGGGTGCCGACAACCCACTGCTGGCCCCGCCAGTGACCGGCGCCGAGCTCTTAAGCCAGGATGTGCGGCTGCTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'22-23,'22-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.263 C2=0.831
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(17.5=100)
A:
PF129312=Sec16_C=PD(11.8=81.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCATCTACTGCTGCCG
R:
CCAGCTGGGTGGGTTCTGG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]