DreEX0066316 @ danRer10
Exon Skipping
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52049957-52051411:-
Coord C1 exon
chr16:52051355-52051411
Coord A exon
chr16:52050808-52050934
Coord C2 exon
chr16:52049957-52050097
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTGTGTGTGTTTCAGAGT
3' ss Score
10.69
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
ATTGTGTGGGATGAAAAGAAGCAGAAATGGGTGAATCTGGATGAGCCAGAGGAAGAG
Seq A exon
AGTAAACCTCCTCCTCCCCCACCCACCGGCTTCCCCAAAGCTCCAATGAGCGCTCCAGCTATGGTACCTCCAGGAGTGGCCGGCCCACCATCAGGGCCTCCTGTGAACATGTTCTCCAGAAGAGCAG
Seq C2 exon
GCACGAGGAGTCGTTATGTGGATGTGCTGAATCCTGGTCGTGGAGGAGCTAAAGCAGTGGCTTCAGTGCCTCCTCCTGCTGATCTGTTCGCTCCTCTCGCACCCATGGCCATGCCAGCCAACCTCTTCACACCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-'29-31,'29-29,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTGGGATGAAAAGAAGCAGA
R:
CAGCTGGTGTGAAGAGGTTGG
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]