GgaEX1051400 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7868317-7869245:+
Coord C1 exon
chr17:7868317-7868373
Coord A exon
chr17:7868662-7868773
Coord C2 exon
chr17:7869108-7869245
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTCTCCCTGCAGAGT
3' ss Score
13.3
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTGTTTGGGATGAAAAGAAGCAGCGTTGGGTTAATTTGGATGAACCAGAAGAAGAG
Seq A exon
AGTAAGCCTCCACCACCACCTCCTACAGGATTTCCTAAAGTTCCTCAGGCTGCTCCATCTGGGCCTGGAGGCCCACCTAGTGCCCCTGTCAACATGTTCTCTAGGAGAGCAG
Seq C2 exon
CAGGAAGCAGAGCTCGTTACGTTGATGTTCTGAATCCAGGTGGAACCAAGTCAAGTGGTGCTGTTCCTGCACCATCAGACCTATTTGCACCACTGGCACCAATGCCAATTCCTGCAAATGTATTTGTTCCAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'31-37,'31-36,32-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.974 C2=0.936
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGATGAAAAGAAGCAGCGT
R:
CAAATACATTTGCAGGAATTGGCA
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]