BtaEX6047221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103942528-103943316:-
Coord C1 exon
chr11:103943260-103943316
Coord A exon
chr11:103943063-103943174
Coord C2 exon
chr11:103942528-103942665
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGCGGGCTTTCCTTCCGCAGAAG
3' ss Score
9.3
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCGTCTGGGATGAAAAGAAGAACCGATGGGTGGACGTCAATGAGCCAGAGGAGGAG
Seq A exon
AAGAAGGCTCCACCTCCGCCTCCAGCTGCCCTTCCCAAGGCTCCACAAGCTGCCCACCCTGGTCCCGGAGGGCTCCCCAGACCCACCGTGAACATGTATTCTAGAAAAGCAG
Seq C2 exon
CTGGAACCAGGGCACGCTACGTGGACGTCTTGAACCCGGGGGGCCCCCAGCGGAGCGAGCCAGCCGTGGCTCCCACTGACCTCTTTGCACCCCTGGCCCCGCTTCCAATTCCGGCTCACCTGTTGGGCCCAAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'30-35,'30-32,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=1.000 C2=0.936
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTGGGATGAAAAGAAGAACC
R:
CTGCGTTTGGGCCCAACAG
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]