GgaEX1051400 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8557413-8558341:+
Coord C1 exon
chr17:8557413-8557469
Coord A exon
chr17:8557758-8557869
Coord C2 exon
chr17:8558204-8558341
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTCTCCCTGCAGAGT
3' ss Score
13.3
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTGTTTGGGATGAAAAGAAGCAGCGTTGGGTTAATTTGGATGAACCAGAAGAAGAG
Seq A exon
AGTAAGCCTCCACCACCACCTCCTACAGGATTTCCTAAAGTTCCTCAGGCTGCTCCATCTGGGCCTGGAGGCCCACCTAGTGCCCCTGTCAACATGTTCTCTAGGAGAGCAG
Seq C2 exon
CAGGAAGCAGAGCTCGTTACGTTGATGTTCTGAATCCAGGTGGAACCAAGTCAAGTGGTGCTGTTCCTGCACCATCAGACCTATTTGCACCACTGGCACCAATGCCAATTCCTGCAAATGTATTTGTTCCAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.974 C2=0.936
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGATGAAAAGAAGCAGCGT
R:
CAAATACATTTGCAGGAATTGGCA
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]