MmuEX0002972 @ mm9
Exon Skipping
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25287516-25288729:+
Coord C1 exon
chr2:25287516-25287609
Coord A exon
chr2:25287904-25287906
Coord C2 exon
chr2:25288618-25288729
Length
3 bp
Sequences
Splice sites
3' ss Seq
TCGGCCCGGCCTGCATGCAGTCT
3' ss Score
3.43
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGGTCCTGGCTTTTGAGATCTTCATCCCGCTTGTCCTCTTCTTCATCCTGTTGGGACTGCGGCAGAAGAAGCCCACCATCTCTGTGAAGGAAG
Seq A exon
TCT
Seq C2 exon
CTTTCTACACCGCAGCACCGCTGACATCAGCCGGCATCCTGCCCGTCATGCAGTCGCTTTGCCCTGATGGCCAGCGTGATGAGTTTGGCTTCCTGCAATATGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAGCCCACCATCTC
R:
CCATCAGGGCAAAGCGACTG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: