MmuINT0007798 @ mm9
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25287516-25288729:+
Coord C1 exon
chr2:25287516-25287609
Coord A exon
chr2:25287610-25288617
Coord C2 exon
chr2:25288618-25288729
Length
1008 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCATTCTTGCTCCCACTAGCTT
3' ss Score
6.03
Exon sequences
Seq C1 exon
TGGGTCCTGGCTTTTGAGATCTTCATCCCGCTTGTCCTCTTCTTCATCCTGTTGGGACTGCGGCAGAAGAAGCCCACCATCTCTGTGAAGGAAG
Seq A exon
GTGAGGTGCAGGCATAGCCCGGGCACGTGGGTGGGCAGGGAGGGAGCAGCGTCCTTTCTGTGCACGAGTCCGCCTGAGGTTCTCTGAGGCCACAGCCCCAAGTGCCTGCTCCCTATGTGATCCTAGCCACACATGGCTAGGTCATGGAGGTCATGGCTGGCCATGGTGCCCATGAATGATGGAGTTGCCTGTTTCTGGAGGGCCAGGCGTTCACCTCTGTTCTCCTCTGTTCTGTTTTGACCTGTCCCCCACCCCGCATGGTCTCTTGTCCTCCTCGGCCCGGCCTGCATGCAGTCTGTAAGTGAGCAGCCATCTCCTCCTTGCTGGCTCGGGTGGCAGCCACGGATGGCCTGGCAGGTCCTCCTGGTGCGGCTTAAGCACCCCTACTGCTTGCATTAACAGCCTTCTAGCAGCTGGGTCCTGTAGAAGCCACTGCCCGTGGTCAGGAAAGGCTGGCTTATGACTCAGGGTGGCGGGCTGTGATATGGGTGGTGGTGATCAGTGAAGGGCCAGGCCATCTGGGTCATAGCTGATATCCTGCTCAAGCCACTGGAGTAACTTCTTGGCAGGGTATCTGTGAGGTTGCCTGGCCGTGCTTTATAAGGGTGGGGTTCCTGGGCTGAGCCTGGGCTAGCCTGAGATGAGACTGGGATGGCCAGTGACTTTCCCTTCAGACTCCTTAGCTGTTGCACTTACTCTGCTAACCAGTTGGCCTGAGAGGTCAGAGGTCACTGCTAAGGGGGGTGCCTCCTGTGCTACCTCGGTCTCTGTTGGAAGGGGAGATAGTTGGGGCATTTGTGCACTGCACAGGCTAAGGAGTGATATGTTGGGTGTTACAGGAGAGGGGATGGCAGGTGGCCCTCTGACCTCTGACCTGCAGAGTCATTTGCCTTAGCACAGCTTGGGGCCATGTGCTCTGTGCTCCAACCCTAGTCTGCCTGAAGTGTCTCAGGAAGACTGTCTCTGTACGACTCTTGGCCCTGTCTCCCTCATTCTTGCTCCCACTAG
Seq C2 exon
CTTTCTACACCGCAGCACCGCTGACATCAGCCGGCATCCTGCCCGTCATGCAGTCGCTTTGCCCTGATGGCCAGCGTGATGAGTTTGGCTTCCTGCAATATGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-Abca2:NM_007379:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCCTGGCTTTTGAGATC
R:
TGCAGGAAGCCAAACTCATCA
Band lengths:
191-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: