GgaINT1005110 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:443749-446179:-
Coord C1 exon
chr17:446080-446179
Coord A exon
chr17:443861-446079
Coord C2 exon
chr17:443749-443860
Length
2219 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGC
5' ss Score
4
3' ss Seq
TACACTCTTACTGGCTCCAGCTT
3' ss Score
3.37
Exon sequences
Seq C1 exon
TGGGTGCTGGCCTTTGAGATCTTCATCCCGCTGGTGCTCTTCTTCATCCTCCTGGGGCTGAGGCAGAAGAAGCCGACCATCCCCGTGAAGGAAGGTGCGT
Seq A exon
GTGAGCAGGTGGTGCCCAGGGCATCCACACCTGGGGGAAGGACGGGAACACTGGGGAGCTGTTCCAGCCCCCTGGGACAACCTGGGGCTGAGAAGGATGCTGACAGCTGGCAGGGATCCCTTGGAGCCTTTTGGGGGGTAGTACAGAGGAGGGGCTGCATACCAGAATGATGGGGTTAGAGAGCCAGAGGCATTCCCAACCAGGGCGGGCTCCCCTGGGGCCAGCCAGGCAGAGGGGTGGTGGAGCTGGGTGGTGCCAGGACAGCTGCAGTGCCCAGAGCTCCTAGGGAGCAGCTGGGGGGATTCTGGGGAGGGGCAGGGGCTGTGCTCTGTGTGTAGCCCTGAACATGGCTGCGGAGGCTTGGAGGCTTGCCGGGCTGGGGCAAAGCCAGCAATGGATGGGGCAGGAGCTCAAAGTGCCCTGGAGGTGTGCAGCTGGAGGTTGTGGGGCCGTGCCACCAGGAGGAGGACAGTGTGGCAGCAAGATGCCCGGAGTTGTCCAGCCGGGGGGCACAGCGGGGCCGGATGGAGGTGCCAGGAGCTGGCGGCTGTGTTCCTGCATGACGAAGCCTGAGCCTTTGTTTCAGCACGTGCCAACGAGGGAAAGCCCAGTGGAGGGCAGTGATGGGTGCTGCTTTGGTTCCTGCCCTGCTGCTGACGTGCACTGTGTTGTGTTTTTTGGTTTGTTTTTTCTTTCTTTTCTCTCATGTTTTCTTTTTCTTTCCCACCATCATCCCCGCCTGCCTGCCCTCCATGCCTCTACTGCATGCTCCAGTGTGTAAGTTGGTTGGACGGGTGGGTGCCTCTCCCCCTCCCCTGCCTTTGCCAGCCAGGAGTTTTGGGGATACAGCCTGATTGGGATCAGCTCACTGTGGTCTAATCAGCACCTCTGTAACCTGTCGCTTTCCTCCCTGGCTGGTGAAGATGAGCTTGAGCTGTTGTGCCCAGGGCCCCTCTGTTGCTGCCTGCAGTGGGTTTTTGTTACTGGCCCAGACTGAGGCTGGGTTCAGAGGGTGCTTGGGGCCACTGGCAGCTGTGACCCAGGCAGGTTGAGCTGTACAGGGCTTCCCAGGCTGTCTCTCCCCCATCTCTCCTGGGGCAAACCCTGCTGCCTGCAGACTGCGATGCAGCTTGTGGTTGCCCAGCTGTGCCTGTGCTCACCCCCGAAGCAGCCAGGCTCCAGGCAGCTATAGTCCCCTGCCACCAGGTTCCTGTCCCAGCCTCTGAGCTCCGGGATGGAGCTGGACATGGCACTCTCTATAGGAGCCAGAAGGACAGTGAGATGCCACCTGAGTGATGCTCTTGTCATCTCTCTGTGGCATGGCTGCCAGCATGGGGCCTATCCAGCCTGTGGCTCCATGCTCTGCCTGGCCCCGTTTGCCCTGAACTGGCCCTGTCTGTTCACACAAGCCCATCTTCACCAGCCCTCCTGTCTTGACTGTGCGCTGACCTGCCTCTAACTGGGGCTGGGGCTGGGGCTTGCCCCTCTTGCAGAACCCCCATCCCTGCCAAGTGCTGCCCAGAGACCACCTTGGGTCCCCCTCAGGAGGGGCTGCCGGGCTTCCTCTGCCTGGGAAGGACTGGGGAAGGCTGTGGCTGGTAAGGGCTCAGCCCTGGCCAGGGTGGGCATTTGCTGTCTCCTTGCTGCTCCTTGCTTTCTCCATCTCCCTCCTTACCGTGTCTCCATTTCTCACCTCCAGCAGCCGCGCATCGAGGCAGCCGGGTGGGGAGGAGGATGGGTCTCGAGGGCCTGGGGGTCCTGGGAAGTTCTGGGGGCCAATTCTTTCCTGTTGTATTCTTCCTCCTTCTCTTCCTCTGGAAATGCAGCGGTGTCTCTGAGGTTACTAACAAGAGCAGCTGAGAGGCCGGGGGAGGTTGGCAGCACCCCAGTGGGCAAGCATCAGAAGTCAGCATTGTCCTGGGGCCTGGTGGCCACTGCCACCCAGAGGGGAGCAGGCACGGGCTGCTGGGGGGGAGCTGGGTGGCCCTGGTGGCGGGCAGGAGCTGCTCCCAGCCCCAGGGAGCTGCTGGTGGGACTGCCTCAGTAGGCTGCAGACTTCTGAGCCTGGCTGCCCAACCTTCCCCTGGGCCTCGCCAGATGCAGTGTGTGCTTCTTTCTGAACTGAGTGTCTGTCTCCCTGGTGGCCCCTGCCTGCCCTTGCCTTTCCTCCTTCCTGCCCCTGCCTTCCCTTGCCTCTTCTACACTCTTACTGGCTCCAG
Seq C2 exon
CTTTCTACACGGCGGCCCCGCTCACCTCGGCCGGGATCCTGCCTGTCATGCAGTCCCTGTGTCCCGACGGCCAGCGCGATGAGTTTGGCTTCCTGCAGTACTCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]