BtaINT0010992 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106209227-106210369:+
Coord C1 exon
chr11:106209227-106209320
Coord A exon
chr11:106209321-106210257
Coord C2 exon
chr11:106210258-106210369
Length
937 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCTCTCGCCTGCCCCCCAGCCT
3' ss Score
7
Exon sequences
Seq C1 exon
TGGGTCTTGGCCTTCGAGATCTTCATCCCGCTCGTCCTGTTTTTCATCCTGCTGGGGCTTCGGCAGAAGAAGCCCACCATCTCTGTGAAGGAAG
Seq A exon
GTGAGGGGCTTCTGGGGCCCGGCCGGGAGGGGCGGGCAGGCGGCCCTCATGGCGTCTCGCACACCCGTCGGTGTGCACACGGCTCCTCCGGGCACAGGGGTGCCCGTCCCCGCCGCGGTCCCACGCCCCACGCCTGGCTGGGCTGGGGTGACCGTGGCGCTGGGTCTCACTGTCTCCTCTGTTCTGTTCTGCCCCCTCCCCGCCCTGCATGGTCTCTGTCCTCCTCCTGGGCCTGCATGCAGTCTGTAAGTGCGTGGTCGCCTCCCGGCTGGCCCGGGCAACCTCAGGAGCCCTGAGGGGCTTCCTGGTGAAGCTTGCGCCCTCCCCCGCCCCTCGCTTGCACTAACGGAGTCTCCTGGCCAGCTGGGTCCTGCAGGGCCCCTGCCTGCTGTCAGGAACAGCTGGCTCAGTGGGGTGGGGGTGGGGTGGTGGGAGGTCAAGGCTGGAGTCCCCTGGACGTCGGTGGCTCCCTGGTCAGGCTCCCCGGTGTCACTCAGGGTGGGGTTGCCTGGCCCTGCTGTGCAGGGCTGCAGAACCTGGCCGCTGTCCACTCAGACCTAGTGGGCTCTTGCGTTCACTCTACTAACCAGCTGGCCAGAGAGGTCAGAGGTCACTGCCCAGTAGGGGCCCCCTGTGCTCCTGAGCCCTGGGGGCAGTGCCGCCTTGTGTTCTTGGTGAAGCAGTCAGAGCGCTGGCTTTGGCTGGTGGAGGGAAGAGGGATGCTCTAGCAGTTGTGGGGAAGGGATGGTGAGATGCCCTTTGACCTCTGACCTGCTGGGGTCATCTGCACTAGAACACTCAGCCTTCTGTTTCCTGTCTGCTGCCTGCAGCTGCTTTTCTTCCTGACTTTCTCTAAATCTCTCTTCTCGGCCTCTGTCTCTTCCCACCCCCCAACCCCGCCCCTCCCCGGCCCTGGGCCCTCTCGCCTGCCCCCCAG
Seq C2 exon
CCTTCTACACGGCGGCGCCCCTCACCTCCGCCGGCATCCTGCCGGTCATGCAGTCGCTGTGCCCCGACGGCCAGCGGGACGAGTTTGGCTTCCTTCAGTATGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254:ENSBTAT00000065373:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTGGCCTTCGAGATC
R:
GTGGAGTTGGCATACTGAAGGA
Band lengths:
206-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development