GgaINT0125055 @ galGal3
Intron Retention
Gene
ENSGALG00000001226 | E1C8X7_CHICK
Description
NA
Coordinates
chr17:825256-825866:-
Coord C1 exon
chr17:825788-825866
Coord A exon
chr17:825306-825787
Coord C2 exon
chr17:825256-825305
Length
482 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGG
5' ss Score
3.69
3' ss Seq
TTCCCTTGCCTCTTCTACACTCT
3' ss Score
0.34
Exon sequences
Seq C1 exon
CTGCTCCTTGCTTTCTCCATCTCCCTCCTTACCGTGTCTCCATTTCTCACCTCCAGCAGCCGCGCATCGAGGCAGCCGG
Seq A exon
GTGGGGAGGAGGATGGGTCTCGAGGGCCTGGGGGTCCTGGGAAGTTCTGGGGGCCAATTCTTTCCTGTTGTATTCTTCCTCCTTCTCTTCCTCTGGAAATGCAGCGGTGTCTCTGAGGTTACTAACAAGAGCAGCTGAGAGGCCGGGGGAGGTTGGCAGCACCCCAGTGGGCAAGCATCAGAAGTCAGCATTGTCCTGGGGCCTGGTGGCCACTGCCACCCAGAGGGGAGCAGGCACGGGCTGCTGGGGGGGAGCTGGGTGGCCCTGGTGGCGGGCAGGAGCTGCTCCCAGCCCCAGGGAGCTGCTGGTGGGACTGCCTCAGTAGGCTGCAGACTTCTGAGCCTGGCTGCCCAACCTTCCCCTGGGCCTCGCCAGATGCAGTGTGTGCTTCTTTCTGAACTGAGTGTCTGTCTCCCTGGTGGCCCCTGCCTGCCCTTGCCTTTCCTCCTTCCTGCCCCTGCCTTCCCTTGCCTCTTCTACAC
Seq C2 exon
TCTTACTAACTCCAGCTTTCTACACGGCGGCCCCGCTCACCTCGCCCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040504:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]