HsaINT1000099 @ hg38
Intron Retention
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137022941-137024236:-
Coord C1 exon
chr9:137024143-137024236
Coord A exon
chr9:137023841-137024142
Coord C2 exon
chr9:137022941-137023840
Length
302 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTCCTCGGCTGGCATGCAGTCT
3' ss Score
3.16
Exon sequences
Seq C1 exon
TGGGTCCTGGCCTTCGAGATCTTCATCCCCCTGGTGCTGTTCTTTATCCTGCTGGGGCTGCGACAGAAGAAGCCCACCATCTCCGTGAAGGAAG
Seq A exon
GTGAGTGCGGCAGGAGGCCCCAGGCACAGCCGGGGGAGCGCGGCACCTCGCACGCCTGCGCTGTGTGTGCACATCTGCACACGGGTGTCCTGCTCCCGGAGTCCCTGAGGTGCGGTGCCTGCTCCCCTGTGTGGTCCTGGGCCGTGCCTCCTGGCTGGGCTGTGGAGGTCGGGGCTGGCCTGTGGCCGCGAATGATGATGCCAACGCCTCTTCCTGGTGATGTGGGCACTCACTGGTCTCCTCTGTTCTGTTTTGATCCCCCTCCCTCCCCGCATGGTCTCTTGTCCTCGGCTGGCATGCAG
Seq C2 exon
TCTGTAAGTGAGCGGCCACCTCCTCCTGGCTGGCCTGGGCAGCAGCTGCGGGGGGCCCATGGGCCGTCCTGGCTTGAGCGCCCTCCCCGCTTGCATTAACAGCCCTCCCGGGCCCCCTGCCGGCCTCAGGAACAGCTGGCTCCAGATGGGGGGTGGCAGGCAGTGAAGTGGGAGGTGGTAGGGAGTGAAAGGCCCGGCCACCTAAAGGCACAGCTGGTGCCTGGGTCAAGCTGAGGCGGCATCTCTCTGCCTGGCCTTGCCTTCTAGGGCTGGGGTGCCTCGGCTTCTGGGCTGAGTCTGGGCTGAGGCTGGGCTGGCCTGGGCTGGGGCTGGAGCGGCCTGGCTACTCTCCCTTCATACTCCTTCAGGCTCTTGCACTCACTCTGCTAACCAGCTGGCCAGAGGTCAGAGGTCACTGCCCAGAGGGGGTCCTTTGTCCTCCCCTGGGCTCTGTAGGCAGTGCCACACCTGAAACGTTTTCGGGGGGAGAGTGCCAGGGCATGTGGGCCTGCACTGGCTGAAAGGAAAGGAATGCTCTGGGAGTTATGGCAGAAGGGGTGGTGAGTGGCTCTTTGACCTCTGACCTGCTGGAGTCATTCGCCCCAGAACGCTTGGCCTGTAGCCCAGCTGGGGCCAGGGCTCTGTGCCGCCTTCTCCCTAACGCTGCTTCTCCTTCCTGACTTTCTCTAAATTTCTCCTCTCGGCCTCTGTCTCCCTCCCCTTCTGGATTCCTCTCTCTCTCTCTCCCCTTTCACCCCCGACCCTGCCCTCTCCCGTGGGTCTGCCAGCCTTCTACACAGCGGCGCCCCTGACGTCTGCCGGCATCCTGCCTGTCATGCAATCGCTGTGCCCGGACGGCCAGCGAGACGAGTTCGGCTTCCTGCAGTACGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331:ENST00000464876:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGCCTTCGAGATCTTCA
R:
CAAGGCCAGGCAGAGAGATG
Band lengths:
349-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains