HsaEX0000256 @ hg38
Exon Skipping
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137022941-137024236:-
Coord C1 exon
chr9:137024143-137024236
Coord A exon
chr9:137023838-137023840
Coord C2 exon
chr9:137022941-137023052
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCGGCTGGCATGCAGTCT
3' ss Score
3.16
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGGTCCTGGCCTTCGAGATCTTCATCCCCCTGGTGCTGTTCTTTATCCTGCTGGGGCTGCGACAGAAGAAGCCCACCATCTCCGTGAAGGAAG
Seq A exon
TCT
Seq C2 exon
CCTTCTACACAGCGGCGCCCCTGACGTCTGCCGGCATCCTGCCTGTCATGCAATCGCTGTGCCCGGACGGCCAGCGAGACGAGTTCGGCTTCCTGCAGTACGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACAGAAGAAGCCCAC
R:
CGATTGCATGACAGGCAGGAT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development