BtaEX0001688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106209227-106210369:+
Coord C1 exon
chr11:106209227-106209320
Coord A exon
chr11:106209563-106209565
Coord C2 exon
chr11:106210258-106210369
Length
3 bp
Sequences
Splice sites
3' ss Seq
CCTCCTGGGCCTGCATGCAGTCT
3' ss Score
4.48
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGGTCTTGGCCTTCGAGATCTTCATCCCGCTCGTCCTGTTTTTCATCCTGCTGGGGCTTCGGCAGAAGAAGCCCACCATCTCTGTGAAGGAAG
Seq A exon
TCT
Seq C2 exon
CCTTCTACACGGCGGCGCCCCTCACCTCCGCCGGCATCCTGCCGGTCATGCAGTCGCTGTGCCCCGACGGCCAGCGGGACGAGTTTGGCTTCCTTCAGTATGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000063417fB266
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAGCCCACCATCTC
R:
CACAGCGACTGCATGACCG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development