RnoEX0004847 @ rn6
Exon Skipping
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2652208-2653404:+
Coord C1 exon
chr3:2652208-2652301
Coord A exon
chr3:2652611-2652613
Coord C2 exon
chr3:2653293-2653404
Length
3 bp
Sequences
Splice sites
3' ss Seq
CTCGGCCGGCCTGCATGCAGTCT
3' ss Score
4.25
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGGTCCTGGCGTTTGAGATCTTCATCCCCCTTGTCCTCTTCTTCATCCTGTTGGGACTGCGGCAGAAGAAGCCCACCATCTCTGTGAAGGAAG
Seq A exon
TCT
Seq C2 exon
CTTTCTACACGGCAGCACCGCTGACATCGGCCGGCATCCTGCCTGTCATGCAGTCGCTTTGCCCTGATGGCCAGCGTGATGAGTTTGGCTTCCTGCAGTATGCCAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000020339fB304
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAGCCCACCATCTC
R:
CCATCAGGGCAAAGCGACTG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]