MmuEX6102015 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70186944-70263736:+
Coord C1 exon
chr2:70186944-70187028
Coord A exon
chr2:70187956-70188052
Coord C2 exon
chr2:70263630-70263736
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTCACTGGATCTTTTGGCAGCTC
3' ss Score
5.86
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCACCCACAAGCCCAGAGTCCCCCAACAGGCTGTGATGTCACCTCAGGACATGCAGATACAGCAGCTGGGTATACTGTTGCTGAG
Seq A exon
CTCTCAGTTGCTGGAACCGATGTGTCACCTTCTCTGGTGTACCACACTGCCTCAGCTCACCAAAGACTGAGCCCCTGTGAAGACTCTCTCAAACCTG
Seq C2 exon
GTTCCGAAGAAGGTCTCTCCCAGAAGCAGCGAGCACCTCGCAGACGGTGTCAGCAGCCCAAAATGTTGAGTAGCCCCGAGGACACCATGTACTATAACCAGTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'36-37,'36-35,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.879 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACAAGCCCAGAGTCC
R:
TAGTACATGGTGTCCTCGGGG
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: