HsaEX6016646 @ hg19
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171399416-171508244:+
Coord C1 exon
chr2:171399416-171399476
Coord A exon
chr2:171400402-171400498
Coord C2 exon
chr2:171508138-171508244
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTACTGGGTTTTTCTGAAGCAC
3' ss Score
4.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCATTCACAAGCCCAGAGTTCTCCAAAAGGGTGCGATATCTTCGCAGGACATGCAAACAAG
Seq A exon
CACTCGGTTTCTGGGACTGATTTGCTGTCTTCTCGGATATGCCATCCTGCTCCAGATCAGCAAGGATTGAGTCTCTGGGGAGCCCCTCAAAAGCCTG
Seq C2 exon
GTTCAGAAAATGGTCTTGCACAGAAGCATCGAACACCTCGCCGACGATGTCAGCAGCCCAAAATGCTGAGTAGCCCTGAGGACACCATGTACTATAACCAGTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'39-41,'39-39,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.657 C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAAGCCCAGAGTTCTCCA
R:
ACTGGTTATAGTACATGGTGTCCTCA
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)