MmuEX6102015 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70348887-70425679:+
Coord C1 exon
chr2:70348887-70348971
Coord A exon
chr2:70349899-70349995
Coord C2 exon
chr2:70425573-70425679
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTCACTGGATCTTTTGGCAGCTC
3' ss Score
5.86
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCACCCACAAGCCCAGAGTCCCCCAACAGGCTGTGATGTCACCTCAGGACATGCAGATACAGCAGCTGGGTATACTGTTGCTGAG
Seq A exon
CTCTCAGTTGCTGGAACCGATGTGTCACCTTCTCTGGTGTACCACACTGCCTCAGCTCACCAAAGACTGAGCCCCTGTGAAGACTCTCTCAAACCTG
Seq C2 exon
GTTCCGAAGAAGGTCTCTCCCAGAAGCAGCGAGCACCTCGCAGACGGTGTCAGCAGCCCAAAATGTTGAGTAGCCCCGAGGACACCATGTACTATAACCAGTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'50-54,'50-48,54-54=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.879 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACAAGCCCAGAGTCC
R:
TAGTACATGGTGTCCTCGGGG
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types