MmuEX0030513 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70330832-70349995:+
Coord C1 exon
chr2:70330832-70330940
Coord A exon
chr2:70348887-70348971
Coord C2 exon
chr2:70349899-70349995
Length
85 bp
Sequences
Splice sites
3' ss Seq
GATTTTTGTTGTCCTTTTAGGCA
3' ss Score
9.6
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTCTCCAAACCACTCCTGATCAGAAATACTGTCCAGATTCAGGAGGAGAGTCCAACAGAGGTCATGAAGAGACGTCAAGGAACTGCCCCGCTGAAGCCGACACAGATGG
Seq A exon
GCACCCACAAGCCCAGAGTCCCCCAACAGGCTGTGATGTCACCTCAGGACATGCAGATACAGCAGCTGGGTATACTGTTGCTGAG
Seq C2 exon
CTCTCAGTTGCTGGAACCGATGTGTCACCTTCTCTGGTGTACCACACTGCCTCAGCTCACCAAAGACTGAGCCCCTGTGAAGACTCTCTCAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'50-54,'50-47,53-54=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.966 C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATTCAGGAGGAGAGTCCA
R:
GAGAGAGTCTTCACAGGGGCT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types