GgaEX6042377 @ galGal3
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
NA
Coordinates
chr7:19774908-19782339:-
Coord C1 exon
chr7:19782219-19782339
Coord A exon
chr7:19775821-19775884
Coord C2 exon
chr7:19774908-19774932
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATCTTGCTTTTAGGCA
3' ss Score
10.31
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTTTCAGGGGATATATTGTTCGTAAAAACTACCCAAGACTGAAGAAGAGCACTGGCTGTGTAGCAGATTCTCAGCATATGAGCAGCTGCTCTACTTCTGATGTCGACTATGAAGAGCACTG
Seq A exon
GCAGCAAACAAGTAACCAGTCTTCTCCTGTGGTGCCCGATTTTCTTGACAAACAAACAAAAAAG
Seq C2 exon
GATTGGGATGAGATTGCTGCTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'32-32,'32-30,33-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTCGTAAAAACTACCCAAGACT
R:
GAGAAGCAGCAATCTCATCCCA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]