GgaEX6042377 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17812147-17819686:-
Coord C1 exon
chr7:17819566-17819686
Coord A exon
chr7:17813168-17813231
Coord C2 exon
chr7:17812147-17812282
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATCTTGCTTTTAGGCA
3' ss Score
10.31
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTTTCAGGGGATATATTGTTCGTAAAAACTACCCAAGACTGAAGAAGAGCACTGGCTGTGTAGCAGATTCTCAGCATATGAGCAGCTGCTCTACTTCTGATGTCGACTATGAAGAGCACTG
Seq A exon
GCAGCAAACAAGTAACCAGTCTTCTCCTGTGGTGCCCGATTTTCTTGACAAACAAACAAAAAAG
Seq C2 exon
AAGGATTGGGATGAGATTGCTGCTTCTCCCTTTACTGTAAAAAATACGTGCAAAATGAGTGATTCACAATTAATTATCCAATCTCAGTCAATCGCAGACCATCAGTCAAGCCCCCTGAGATGTCCTAAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'50-51,'50-50,55-51=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.682 C2=0.283
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=26.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015648fB9715
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTACTTCTGATGTCGAC
R:
GCTTGACTGATGGTCTGCGAT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]