HsaEX6016647 @ hg19
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171375948-171400498:+
Coord C1 exon
chr2:171375948-171376050
Coord A exon
chr2:171399416-171399476
Coord C2 exon
chr2:171400402-171400498
Length
61 bp
Sequences
Splice sites
3' ss Seq
TATTATTGTTATCTTTTCAGGCA
3' ss Score
9.42
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TTCTCAGGGGCTCTGTACATCGTAGGAGCCATTCACAAGCAGAATCCAACAATGGCCGTACACAGACTTCAAGCAACTCTCCTGCTGTCACAGAGAAAAATGG
Seq A exon
GCATTCACAAGCCCAGAGTTCTCCAAAAGGGTGCGATATCTTCGCAGGACATGCAAACAAG
Seq C2 exon
CACTCGGTTTCTGGGACTGATTTGCTGTCTTCTCGGATATGCCATCCTGCTCCAGATCAGCAAGGATTGAGTCTCTGGGGAGCCCCTCAAAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'36-39,'36-38,39-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.730 C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAATGGCCGTACACAGA
R:
GCTCCCCAGAGACTCAATCCT
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)