DreEX6034867 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3734780-3774592:-
Coord C1 exon
chr9:3774544-3774592
Coord A exon
chr9:3771549-3771654
Coord C2 exon
chr9:3734780-3734883
Length
106 bp
Sequences
Splice sites
3' ss Seq
GAATTTGTGTTTGTCTTTAGGTT
3' ss Score
10.87
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACAACCCAGTTCCAAAAGATCTTCCACCAATCACTCGCCGGATGAAAAG
Seq A exon
GTTGTCTCTGTCAGCGCAGACTCAGGCATCGGCTCCAGTGACGCGTCTGTGCCCAAAACAGACAAACAGAGTGACAGCAGAGAGAGAGCGCCACTGAGCAAACAAG
Seq C2 exon
GCCCAACGCTGAAGCTACACCAGCACCGTTCCCCTCGGCGTAGAGGACAGCAGCCCAAGCTCCTGAACAGCCCGGAAGACAGTCTTTATTACAACCATCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'31-32,'31-30,32-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCAGTTCCAAAAGATCT
R:
TGGTTGTAATAAAGACTGTCTTCCGG
Band lengths:
146-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]