GgaEX7005985 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17773807-17813231:-
Coord C1 exon
chr7:17813168-17813231
Coord A exon
chr7:17812147-17812282
Coord C2 exon
chr7:17773807-17773913
Length
136 bp
Sequences
Splice sites
3' ss Seq
AACAGCTTTCTTTATTCCAGAAG
3' ss Score
6.61
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGCAAACAAGTAACCAGTCTTCTCCTGTGGTGCCCGATTTTCTTGACAAACAAACAAAAAAG
Seq A exon
AAGGATTGGGATGAGATTGCTGCTTCTCCCTTTACTGTAAAAAATACGTGCAAAATGAGTGATTCACAATTAATTATCCAATCTCAGTCAATCGCAGACCATCAGTCAAGCCCCCTGAGATGTCCTAAAAAAGGAG
Seq C2 exon
GTTCAGAAAACTGTCTTGAACAGAAGCTGAGAACACCTCGTCGACGATGTCAGCAGCCCAAAATGCTGAATAGCCCTGAGGACAACATGTACTATAACCAGTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'55-55,'55-51,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.283 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAACAAGTAACCAGTCT
R:
GTTATAGTACATGTTGTCCTCAGGGC
Band lengths:
162-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]