MmuEX0002786 @ mm9
Exon Skipping
Gene
ENSMUSG00000091299 | AL732311.1
Description
small nucleolar RNA host gene (non-protein coding) 7 [Source:MGI Symbol;Acc:MGI:1919341]
Coordinates
chr2:26493561-26495750:-
Coord C1 exon
chr2:26495578-26495750
Coord A exon
chr2:26494950-26494991
Coord C2 exon
chr2:26493561-26493615
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTCCTTTCCCTAGGAA
3' ss Score
12.89
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGCGGCTCTATGTTTGTATCGCCATTGTTACCGTTGGGACGCCGCGGATGACCCTATATACCCTTGGCCGGCTACCGGGAAGACTGCGTCTCCTGACGATCGTAACGAAGATGTACCGTGCTTTCCTTCTGAGAGTTTAGTCGCCCTAATATGTGCAGCAGGCTAACCGCGTG
Seq A exon
GAAGCTTGCCTGCCAGAAAGAAAGCGCCTGTTGGGCTATTAG
Seq C2 exon
GAAAGTTGGTGACTAAAGTCTGCTTATGCCAAATGCCCAGCAATGTCCAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091299_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGACTGCGTCTCCTGA
R:
ACTGGACATTGCTGGGCATTT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: