MmuINT0149706 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:26494950-26495764:-
Coord C1 exon
chr2:26495578-26495764
Coord A exon
chr2:26494992-26495577
Coord C2 exon
chr2:26494950-26494991
Length
586 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TCTTCCTTTCCTTTCCCTAGGAA
3' ss Score
12.89
Exon sequences
Seq C1 exon
CTCTCGGCAGCCATGGCGGCTCTATGTTTGTATCGCCATTGTTACCGTTGGGACGCCGCGGATGACCCTATATACCCTTGGCCGGCTACCGGGAAGACTGCGTCTCCTGACGATCGTAACGAAGATGTACCGTGCTTTCCTTCTGAGAGTTTAGTCGCCCTAATATGTGCAGCAGGCTAACCGCGTG
Seq A exon
GTAAGGGGAAGGGCGTTCACGATGTGCCCGAGGGCCGGGTGGACTGCCCCCAGAAGTCCCGAGAAGGAAAGCCGAGGCTCCTGTCTGGACTAGTACAACGCAGAAGCCCCTGGTTGGGGCTCCAGACCGGTCTCCCTTTCGTAGGGCTAAGGAGCACCAGGGAAAGACTCTGTCTATATTTGCTGCATGCTGAATACCAACTTGAGATAACTCAGATGTGAGACAGTACTCTGTCTAGTGTAATGCCGCTGAGTTGGAGAGAAAGAAAAAGGGGTTTTATTTGTAAAAAGCCTAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACCAAAAAAAAAAAAAAAAAAAAAAGCCTTAGCAAGGACAAGCCATGTGGACCCATTGGAATAGGAATAAAATACAAGTCTAGTGCAGTCCCCCAAAGTGATCCTGATAGGGTGTGTGCAGAATGCTTTCTTCCTTTCCTTTCCCTAG
Seq C2 exon
GAAGCTTGCCTGCCAGAAAGAAAGCGCCTGTTGGGCTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
-Snhg7:NR_024068:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCGGCTCTATGTTTGT
R:
CCCAACAGGCGCTTTCTTTCT
Band lengths:
212-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: