MmuEX0041121 @ mm9
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:38939058-38950304:-
Coord C1 exon
chr2:38950223-38950304
Coord A exon
chr2:38949957-38950082
Coord C2 exon
chr2:38939058-38939130
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCTTTTCTTTTGAGGTT
3' ss Score
4.84
5' ss Seq
CTGGTGGGA
5' ss Score
3.33
Exon sequences
Seq C1 exon
CCTTCATCCTGGAGATCTCTATCCATTCACAAGGAAACCCCTGTTCATCGTTGTGGACTCCTCCAATAGTGTTGCCTACAAG
Seq A exon
GTTGTGCATGCTAGTCAGGATCTGATGCTATGAATAGAAACAAGAAGAAACGCATGAATGGACTCTCAGTGGAAAATAATAAATCCTCCTGCAGGAAAAAAATTTTCAAGATTTCCAAGATCTCTG
Seq C2 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.4=100)
A:
PF120703=DUF3550=PD(1.8=63.6)
C2:
PF120703=DUF3550=FE(4.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCCTGGAGATCTCTATCCA
R:
TTGCAAAGCTTTTGGATATGCCG
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types