HsaEX0011615 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127738393-127757294:-
Coord C1 exon
chr9:127757213-127757294
Coord A exon
chr9:127756946-127757072
Coord C2 exon
chr9:127738393-127738465
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCTTTTCTTTTGAGGTT
3' ss Score
4.84
5' ss Seq
CTGGTGGGA
5' ss Score
3.33
Exon sequences
Seq C1 exon
CCTTCATCCCGGGGATCTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAG
Seq A exon
GTTGTGCATGCTAGTCAGGATCGGGTGCTATGAATAGAAACAAGAAGAAAACGCATGAATGGACACTCAGTGGAAAATAATAAATCCTCCTGCAGGAAAAAAAAATTCAAGATTTCCAAGATCTCTG
Seq C2 exon
AATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(36.0=100)
A:
PF120703=DUF3550=PD(2.1=72.7)
C2:
PF120703=DUF3550=PU(75.0=96.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCCCGGGGATCTCTA
R:
TTGTAAAGCTTTTGGATATGCTGT
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)