RnoEX0078283 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23370610-23380439:-
Coord C1 exon
chr3:23380358-23380439
Coord A exon
chr3:23380090-23380215
Coord C2 exon
chr3:23370610-23370682
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCTTTTCTTTTGAGGTT
3' ss Score
4.84
5' ss Seq
CTGGTGGGA
5' ss Score
3.33
Exon sequences
Seq C1 exon
CCTTCATCCTGGAGATCTGTATCCATTCACAAGGAAACCCCTGTTCATCATTGTGGACTCCTCCAATAGTGTTGCCTACAAG
Seq A exon
GTTGTGCATGCTAGTCAGGATCTGATGCTATGAATAGAAACAAGAAGAAACGCATGAATGGACTCTCAGTGGAAAATAATAAATCCTCCTGCAGGAAAAAAATTTTCAAGATTTCCAAGATCTCTG
Seq C2 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.4=100)
A:
PF120703=DUF3550=PD(1.8=63.6)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Inclusion Isoform:
ENSRNOT00000039410fB12930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCCTGGAGATCTGTATCC
R:
TTGCAAAGCTTTTGGATATGCCG
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]