BtaEX0031461 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95941530-95952311:-
Coord C1 exon
chr11:95952230-95952311
Coord A exon
chr11:95951965-95952091
Coord C2 exon
chr11:95941530-95941602
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTCTTTCTTTTCTTTTGAGGTT
3' ss Score
4.49
5' ss Seq
CTGGTGGGA
5' ss Score
3.33
Exon sequences
Seq C1 exon
CCTCCATCCTGGAGACCTCTACCCCTTCACAAGGAAGCCGCTGTTCATCATTGTCGATTCATCCAACAGTGTTGCTTACAAG
Seq A exon
GTTGTGCATGCTAGTCAGGATCTGGTGCTATGACTAGAAACAAGAAGAAAACGCATGAATGGACACTCAGTGGAAACTAATAAATCCTCCTGCAGGAAAAAAATATGCAAGATTTCCAAGATCTCTG
Seq C2 exon
AATTTCACAAACTTATTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCCTACCCAAAAGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.4=100)
A:
PF120703=DUF3550=PD(2.1=72.7)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Inclusion Isoform:
ENSBTAT00000020665fB6146
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCTGGAGACCTCTACCC
R:
AAGCTTTTGGGTAGGCTGTAGG
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development