RnoEX0078278 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23370610-23380215:-
Coord C1 exon
chr3:23380090-23380215
Coord A exon
chr3:23377139-23377389
Coord C2 exon
chr3:23370610-23370682
Length
251 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTTTTTTCAGAGC
3' ss Score
12.27
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTGTGCATGCTAGTCAGGATCTGATGCTATGAATAGAAACAAGAAGAAACGCATGAATGGACTCTCAGTGGAAAATAATAAATCCTCCTGCAGGAAAAAAATTTTCAAGATTTCCAAGATCTCTG
Seq A exon
AGCTGGGGACTGAACCCAGGGCCTTGCGTTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACTCCTACTCACTGATTCTTGACCTCCCTCTTCTCTTCTCCTGGGACCCTTTCAGGCTTTCCACATTTCTTAGTTCCCTTAGTATTGTCCATCACTGTGTTCCCGCCTGCTTTTGTTCTCTGTCTCTTTAGCAGTGTCTAACACATTATTAATCCATCTTGAGTTTCATGAGTTTCATCTTGGT
Seq C2 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'26-22,'26-21,27-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PD(1.8=63.6)
A:
PF120703=DUF3550=PD(2.6=83.3)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Inclusion Isoform:
ENSRNOT00000039410fB12928
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGCATGCTAGTCAGGATCT
R:
GCAAAGCTTTTGGATATGCCGT
Band lengths:
196-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]