MmuEX0023093 @ mm9
Exon Skipping
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75501578-75503207:+
Coord C1 exon
chr2:75501578-75501678
Coord A exon
chr2:75501730-75501732
Coord C2 exon
chr2:75503085-75503207
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGGATATGGTGGTGGAGGAGGAG
3' ss Score
-13.39
5' ss Seq
GAGGCTATG
5' ss Score
-7.17
Exon sequences
Seq C1 exon
TAGAATTATTTGGTCCCCCTGAACAACTTTCTATGTGGTTTTCTTTGCAGGTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAG
Seq A exon
GAG
Seq C2 exon
GTAACTATGGTGGTGGTGGAAACTATAATGACTTTGGAAATTATAGTGGACAGCAACAATCAAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-'17-16,'17-15,20-16
Average complexity
C3
Mappability confidence:
80%=67=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.100 C2=0.754
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF116273=HnRNPA1=PU(94.7=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTTTCTTTGCAGGTGGC
R:
TAGTTTCCACCACCACCATAGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: