MmuEX0039805 @ mm9
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51944991-51945804:+
Coord C1 exon
chr2:51944991-51945091
Coord A exon
chr2:51945093-51945208
Coord C2 exon
chr2:51945694-51945804
Length
116 bp
Sequences
Splice sites
3' ss Seq
AACCTGAGTTCAAATACAGGTGG
3' ss Score
-13.11
5' ss Seq
TAGGTATTT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TAGTATCTTGATTGGAAATAAAACTTGAATAATTTGGTCTTTCTCTCTTAAAGGTGCTTCTCCTTATGGAAGTCCCCGTGGGAACCTGAGTTCAAATACAG
Seq A exon
TGGAATGGCTGCAATCCCTTCTATTCAGCTTTTGGGACTGGAAATGATGCTTCATTTTTTGTTGGGCCCAGAAGTTTTGAGTTTTGCCAAGCAACACAAGATTGTATTGAGTTTAG
Seq C2 exon
AGCCACTGGAACACCCGCTAATCAGCAGCCCTTCTTTCTTCTCCAAGTATGCGCATACACTTATCACTGCTGTTCATGATAGCTTTGTCTCAGTTGGAAAGGATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'16-18,'16-17,17-18
Average complexity
C1
Mappability confidence:
88%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTTCTCTCTTAAAGGTGCT
R:
CTGAGGCATCCTTTCCAACTGA
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: