RnoEX0075836 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37614942-37616668:+
Coord C1 exon
chr3:37614942-37615056
Coord A exon
chr3:37615827-37615988
Coord C2 exon
chr3:37616558-37616668
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTTTCTCTCTTAAAGGTG
3' ss Score
10.75
5' ss Seq
TAGGTATTT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTTTGTGTGCCACTGATTCAGAGTACAATAAGCGTTGATAGTAGTGCTTCACCTCAAGGCAGTTCATCTCGAGGATCTACTCCTGGCTTGAGTCCACTGACTCCTGGAAATAAAG
Seq A exon
GTGCTTCTTACGGAACGCCTCGTGTGAACCTGGGTTCAAATATAGGTGGAATGGCTACAATCCCTTCTATTCAGCTTTTGGGACTGGAAATGATGCTTCATTTTTTGTTGGGTCCAGAAGTCTTGAGTTTTGCCAAGCAGCACAAGATTGTATTGAGTTTAG
Seq C2 exon
AGCCCCTGGAGCATCCACTCATCAGCAGCCCTTCTTTCTTCTCCAAGTATGCACATACGCTCATCACTGCTGTTCATGACAGCTTTGTCGCAGTTGGAAAGGATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'14-14,'14-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PD(3.8=35.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGTGCCACTGATTCAGA
R:
CTGAAGCATCCTTTCCAACTGC
Band lengths:
226-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]